Plotting¶

gpvolve.pyplot ships lightweight matplotlib wrappers for sanity-checking MSM outputs. Install with the [plot] extra:

uv pip install 'gpvolve-v2[plot]'

Available plots¶

from gpvolve.pyplot import (
    draw_transition_matrix,
    draw_stationary,
    draw_flux_heatmap,
    draw_timescales,
    draw_landscape_1d,
)

draw_transition_matrix(msm)
draw_stationary(msm)
draw_flux_heatmap(flux)
draw_timescales(timescales(msm.transition_matrix, k=5))
draw_landscape_1d(graph, fitness_column="phenotypes")

These return the matplotlib.axes.Axes they drew on. They are intended for quick inspection rather than publication; for publication-quality figures, work directly with the gpgraph-v2 layout API and overlay the MSM data manually.